Protein ZmOrphan198
ZmOrphan198 is a protein in the Orphans family.
Information
Orphans Name: ZmOrphan198
Species: Maize
Orphans Family: Orphans
Gene Name(Synonym): DBB1
Uniprot ID: B6TEM3

Protein ZmOrphan198

ZmOrphan198 is a protein in the Orphans family.

Overview of domains present in v5 transcripts
PF00643
Zm00001eb078770_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d003195DAPseq no logo sequence fimo position
Zm00001d003195DAPseq no logo sequence fimo position
Zm00001d003195ChIPseq no logo sequence fimo position
Zm00001d003195PChIPseq no logo sequence fimo position

Interactions where ZmOrphan198 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmOrphan198 is the target  
Expand


There are 271 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb078770_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00643
PF00643
Hover here to show all domains

Nucleotide Sequence
Copy to clipboard
     
Expand

CGAACGATCACCTCGCCCATCCCCA...

GRMZM2G018876_T01 from maize genome v3


Related TFome: pUT6580

Amino Acid Sequence
Copy to clipboard

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCVEDRALLC
RDCDEPIHVPGTLSGNHQRYLATGIRVGFSSVCGASAEGLPPAPPKGSSKPTAVVSAPAAGTTTKTRTVKDALPQEVPSS
PFLPPSGWAVEDLLELSDYESSDKKDSSLGLKELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKS
RMEVPDDDDEDYFIVPDLG

Nucleotide Sequence
Copy to clipboard
     
Expand

GCTCTGCTTTGCTCCCGTTCCCATG...

Zm00001d003195_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MRIQCDACEAAAAAVVCCADEAALCARCDVEIHAANKLASKHQRLPLGDAAALPASLPRCDVCQERPAFIFCKDSSLGLK
ELEWFEDIDLFHAHSPAKTAMAEFFASPQPVSNAGFYKANGARLFKKSRMEVPDDDDEDYFIVPDLG

Nucleotide Sequence
Copy to clipboard
     
Expand

ATGAGGATCCAGTGCGACGCGTGCG...


Copyright © 2023 Grassius.org | Last updated: 2023-06-26